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Proteome Software, Inc. is a specialized bioinformatics company dedicated to developing advanced software solutions for protein characterization and proteomics data analysis. Their tools, such as Scaffold, are widely used by researchers in academic, government, and industrial laboratories worldwide to interpret complex mass spectrometry data, identify proteins, and perform quantitative proteomics. The company focuses on providing intuitive, powerful, and validated software to accelerate scientific discovery in the life sciences.
The headquarters serves as the central hub for all core operations, including research and development, software engineering, product management, sales, marketing, customer support, and corporate administration.
Located in a modern commercial office building in downtown Portland, offering excellent accessibility and proximity to other technology companies, research institutions, and city amenities.
Proteome Software likely fosters a highly collaborative, innovative, and intellectually stimulating work environment. Given its focus on bioinformatics, the culture probably emphasizes scientific rigor, problem-solving, continuous learning, and a strong commitment to customer success in advancing proteomics research.
As the primary and sole physical office, the Portland headquarters is critical for Proteome Software's strategic direction, product innovation, and operational execution. It centralizes talent and resources to drive the company's mission.
While headquartered in Portland, Oregon, Proteome Software has a significant global presence through its diverse customer base. Their bioinformatics software solutions are utilized by researchers and organizations in academic institutions, pharmaceutical companies, and biotechnology firms across North America, Europe, Asia, and other regions worldwide. Support and sales are often handled remotely or through distributors to cater to this international clientele.
1220 SW Morrison St, Suite 915
Portland
OR
USA
No additional office locations available.
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As of April 2025, Proteome Software' leadership includes:
Proteome Software has been backed by several prominent investors over the years, including:
Based on publicly available information, there have been no major executive new hires or exits announced by Proteome Software in the last 12 months. The leadership team appears to be stable.
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Common email formats for Proteome Software likely follow standard corporate patterns. While not explicitly published, a highly probable format is the first initial followed by the last name.
[first_initial][last]@proteomesoftware.com
Format
mturner@proteomesoftware.com
Example
75%
Success rate
Proteome Software Blog • December 12, 2023
Proteome Software released Scaffold LFQ, a new addition to its popular Scaffold platform, designed to simplify and enhance label-free quantitative proteomics analysis, offering researchers a more efficient workflow for complex data....more
Proteome Software Blog • July 25, 2023
Proteome Software announced the release of Scaffold DIA version 3.2, featuring improvements and new functionalities for Data-Independent Acquisition (DIA) mass spectrometry data analysis, further empowering proteomics researchers....more
Proteome Software Blog • May 1, 2023
Proteome Software highlighted enhancements to False Discovery Rate (FDR) calculations within its Scaffold 5.2 software, aiming to provide more accurate and reliable protein identifications in proteomics experiments....more
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